SAGSC Bioinformatics Core Services List

The SAGSC Bioinformatics Core is pleased to offer a suite of services based on the nature of analysis required:

Bioinformatics analysis for high throughput sequencing data (Illumina, ONT)


    Whole genome sequencing analysis (Illumina)

    Whole genome long-read sequencing analysis (ONT)
    Microbial genome sequencing analysis (ONT)

    RNA-sequencing analysis (Illumina) 
       - small RNA (miRNA)
       -short RNA
       -standard directional RNA-seq (mRNA, long ncRNA)
       - circ-RNA
    Epigenome analysis (Illumina)
       - ChiP-seq
       - RIP-seq
       - CHART-seq
    Long-read RNA-sequencing analysis (ONT)
       - transcriptome isoform assembly
    Direct RNA sequencing analysis (ONT)
       - epitranscriptome analysis (RNA modifications)
    Direct DNA sequencing analysis (ONT)
       - DNA methylome analysis

Pre-experiment Consultation

  1. Take the guess work out of your experiments, determine the best setup for your experiments by meeting with us before you begin.

  2. BioNet / SAGSC Bioinformatics Core staff are pleased to take the time to understand individual project needs and suggest appropriate experimental design in advance of data acquisition.

  3. The BioNet / SAGSC Bioinformatics Core staff will aid in writing Bioinformatics aspects of grant proposals, helping to secure funding required for future collaboration and use of this facility.  Additionally, the Core staff will write all statistical and bioinformatics methods sections for the protocol of any publication resulting from the analysed data at our facility.

 

Data Analysis

  1. The BioNet / SAGSC Bioinformatics Core offers data analysis and visualization services.  These services are additive and designed for those researchers who prefer a hands-off approach to all aspects of Bioinformatics from pipeline analysis to graph and figure preparation.

 

Pipeline and Advanced Analysis Development

  1. Advanced services that involve the creation of new analysis pipelines for novel projects are available on a case-by-case basis and representatives of the BioNet / SAGSC Bioinformatics Core would be pleased to meet with would-be researchers to discuss such projects.

The SAGSC Bioinformatics core offers discounts for bulk sample analysis and rates may change based on recurrent or high volume orders.